BIRC Staff Publications
North, A. J., Sharma, V. P., Pyrgaki, C., S Y, J. L., Atwal, S., Saharat, K., Wright, G. D., & Salje, J. (2024). A comparison of super-resolution microscopy techniques for imaging tightly packed microcolonies of an obligate intracellular bacterium. Journal of Microscopy. https://doi.org/10.1111/jmi.13376
Schaefer, U., Miroshnikova, Y. A., Xie, W., Larson, A. G., Lu, Z., Chen, S., Bradic, M., Goldgur, Y., Chen, K., Sharma, V. P., Cao, J., Patel, D. J., Narlikar, G. J., Wickström, S. A., & Tarakhovsky, A. (2024). Chromatin mimicry by human JC virus. bioRxiv. https://doi.org/10.1101/2024.11.04.621823
Aydin, B., Mamede, I., Cardoso, J., Deere, J., Alvarez, Y., Qiao, S., Sharma, V. P., Scavuzzo, M. A., Donaldson, G. P., Guo, C.-J., & Mucida, D. (2024). Gut bacteria-derived succinate induces enteric nervous system regeneration. bioRxiv. https://doi.org/10.1101/2024.10.15.618589
Buitrago, L., Menezes, M.-R., Larson, C., Li, J., Kartika, T., Banerjee, P., Glickman, F., & Coller, B. S. (2024). Unbiased High-Throughput Screening of Drug-Repurposing Libraries Identifies Small-Molecule Inhibitors of Clot Retraction. Blood Advances, bloodadvances.2024013810. https://doi.org/10.1182/bloodadvances.2024013810
Le Pen, J., Paniccia, G., Kinast, V., Moncada-Velez, M., Ashbrook, A. W., Bauer, M., … Banerjee, P., … Rice, C. M. (2024). A genome-wide arrayed CRISPR screen identifies PLSCR1 as an intrinsic barrier to SARS-CoV-2 entry that recent virus variants have evolved to resist. PLOS Biology, 22(9), e3002767. https://doi.org/10.1371/journal.pbio.3002767
De Niz, M., Escobedo García, R., Terán Ramirez, C., Pakowski, Y., Abonza, Y., Bialy, N., Orr, V. L., Olivera, A., Abonza, V., Alleva, K., Allodi, S., Almeida, M. F., Becerril Cuevas, A. R., Bonnet, F., Burgos Solorio, A., Chew, T., Chiabrando, G., Cimini, B., Cleret‐Buhot, A., … North, A. J., …Guerrero, A. (2024). Building momentum through networks: Bioimaging across the Americas. Journal of Microscopy, 294(3), 420–439. https://doi.org/10.1111/jmi.13318
Bai, Z., Bartelo, N., Aslam, M., Murphy, E. A., Hale, C. R., Blachere, N. E., Parveen, S., Spolaore, E., DiCarlo, E., Gravallese, E. M., Smith, M. H., Accelerating Medicines Partnership RA/SLE Network, Frank, M. O., Jiang, C. S., Zhang, H., Pyrgaki, C., Lewis, M. J., Sikandar, S., Pitzalis, C., … Wei, K. (2024). Synovial fibroblast gene expression is associated with sensory nerve growth and pain in rheumatoid arthritis. Science Translational Medicine, 16(742), eadk3506. https://doi.org/10.1126/scitranslmed.adk3506
Schmied, C., Nelson, M. S., Avilov, S., Bakker, G.-J., Bertocchi, C., Bischof, J., Boehm, U., Brocher, J., Carvalho, M. T., Chiritescu, C., Christopher, J., Cimini, B. A., …North, A., … Sharma, V. P., … Jambor, H. K. (2024). Community-developed checklists for publishing images and image analyses. Nature Methods, 21(2), 170–181. https://doi.org/10.1038/s41592-023-01987-9
Kim, G., Karadal-Ferrena, B., Qin, J., Sharma, V. P., Oktay, I. S., Lin, Y., Ye, X., Asiry, S., Pastoriza, J. M., Cheng, E., Ladak, N., Condeelis, J. S., Adler, E., Ginter, P. S., D’Alfonso, T., Entenberg, D., Xue, X., Sparano, J. A., & Oktay, M. H. (2023). Racial disparity in tumor microenvironment and distant recurrence in residual breast cancer after neoadjuvant chemotherapy. NPJ Breast Cancer, 9(1), 52. https://doi.org/10.1038/s41523-023-00547-w
Vaisey, G., Banerjee, P., North, A. J., Haselwandter, C. A., & MacKinnon, R. (2022). Piezo1 as a force-through-membrane sensor in red blood cells. eLife, 11, e82621. https://doi.org/10.7554/eLife.82621
Hale, C. R., Sawicka, K., Mora, K., Fak, J. J., Kang, J. J., Cutrim, P., Cialowicz, K., Carroll, T. S., & Darnell, R. B. (2021). FMRP regulates mRNAs encoding distinct functions in the cell body and dendrites of CA1 pyramidal neurons. eLife, 10, e71892. https://doi.org/10.7554/eLife.71892
Hammer, M., Huisman, M., Rigano, A., Boehm, U., Chambers, J. J., Gaudreault, N., North, A. J., Pimentel, J. A., Sudar, D., Bajcsy, P., Brown, C. M., Corbett, A. D., Faklaris, O., Lacoste, J., Laude, A., Nelson, G., Nitschke, R., Farzam, F., Smith, C. S., … Strambio-De-Castillia, C. (2021). Towards community-driven metadata standards for light microscopy: Tiered specifications extending the OME model. Nature Methods, 18(12), 1427–1440. https://doi.org/10.1038/s41592-021-01327-9
Boehm, U., Nelson, G., Brown, C. M., Bagley, S., Bajcsy, P., Bischof, J., Dauphin, A., Dobbie, I. M., Eriksson, J. E., Faklaris, O., Fernandez-Rodriguez, J., Ferrand, A., Gelman, L., Gheisari, A., Hartmann, H., Kukat, C., Laude, A., Mitkovski, M., Munck, S., North, A. J., … Nitschke, R. (2021). QUAREP-LiMi: A community endeavor to advance quality assessment and reproducibility in light microscopy. Nature Methods, 18(12), 1423–1426. https://doi.org/10.1038/s41592-021-01162-y
Nelson, G., Boehm, U., Bagley, S., Bajcsy, P., Bischof, J., Brown, C. M., Dauphin, A., Dobbie, I. M., Eriksson, J. E., Faklaris, O., Fernandez‐Rodriguez, J., Ferrand, A., Gelman, L., Gheisari, A., Hartmann, H., Kukat, C., Laude, A., Mitkovski, M., Munck, S., North, A. J., … Nitschke, R. (2021). QUAREP‐LiMi: A community‐driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy. Journal of Microscopy, 284(1), 56–73. https://doi.org/10.1111/jmi.13041
Jonkman, J., Brown, C. M., Wright, G. D., Anderson, K. I., & North, A. J. (2020). Tutorial: Guidance for quantitative confocal microscopy. Nature Protocols, 15(5), 1585–1611. https://doi.org/10.1038/s41596-020-0313-9
Becher, T., Riascos-Bernal, D. F., Kramer, D. J., Almonte, V. M., Chi, J., Tong, T., Oliveira-Paula, G. H., Koleilat, I., Chen, W., Cohen, P., & Sibinga, N. E. S. (2020). Three-Dimensional Imaging Provides Detailed Atherosclerotic Plaque Morphology and Reveals Angiogenesis After Carotid Artery Ligation. Circulation Research, 126(5), 619–632. https://doi.org/10.1161/CIRCRESAHA.119.315804
Michailidis, E., Vercauteren, K., Mancio-Silva, L., Andrus, L., Jahan, C., Ricardo-Lax, I., Zou, C., Kabbani, M., Park, P., Quirk, C., Pyrgaki, C., Razooky, B., Verhoye, L., Zoluthkin, I., Lu, W.-Y., Forbes, S. J., Chiriboga, L., Theise, N. D., Herzog, R. W., … De Jong, Y. P. (2020). Expansion, in vivo–ex vivo cycling, and genetic manipulation of primary human hepatocytes. Proceedings of the National Academy of Sciences, 117(3), 1678–1688. https://doi.org/10.1073/pnas.1919035117
Demmerle, J., Innocent, C., North, A. J., Ball, G., Müller, M., Miron, E., Matsuda, A., Dobbie, I. M., Markaki, Y., & Schermelleh, L. (2017). Strategic and practical guidelines for successful structured illumination microscopy. Nature Protocols, 12(5), 988–1010. https://doi.org/10.1038/nprot.2017.019
Renier, N., Wu, Z., Simon, D. J., Yang, J., Ariel, P., & Tessier-Lavigne, M. (2014). iDISCO: A Simple, Rapid Method to Immunolabel Large Tissue Samples for Volume Imaging. Cell, 159(4), 896–910. https://doi.org/10.1016/j.cell.2014.10.010
Bleck, M., Itano, M. S., Johnson, D. S., Thomas, V. K., North, A. J., Bieniasz, P. D., & Simon, S. M. (2014). Temporal and spatial organization of ESCRT protein recruitment during HIV-1 budding. Proceedings of the National Academy of Sciences, 111(33), 12211–12216. https://doi.org/10.1073/pnas.1321655111
Smith, B. H., Gazda, L. S., Conn, B. L., Jain, K., Asina, S., Levine, D. M., Parker, T. S., Laramore, M. A., Martis, P. C., Vinerean, H. V., David, E. M., Qiu, S., North, A. J., Couto, C. G., Post, G. S., Waters, D. J., Cordon-Cardo, C., Hall, R. D., Gordon, B. R., … Rubin, A. L. (2011). Hydrophilic Agarose Macrobead Cultures Select for Outgrowth of Carcinoma Cell Populations That Can Restrict Tumor Growth. Cancer Research, 71(3), 725–735. https://doi.org/10.1158/0008-5472.CAN-10-2258
Yu, W.-M., Chen, Z.-L., North, A. J., & Strickland, S. (2009). Laminin is required for Schwann cell morphogenesis. Journal of Cell Science, 122(Pt 7), 929–936. https://doi.org/10.1242/jcs.033928
North, A. J. (2006). Seeing is believing? A beginners’ guide to practical pitfalls in image acquisition. Journal of Cell Biology, 172(1), 9–18. https://doi.org/10.1083/jcb.200507103
Tey, W. K., North, A. J., Reyes, J. L., Lu, Y. F., & Jedd, G. (2005). Polarized gene expression determines woronin body formation at the leading edge of the fungal colony. Molecular Biology of the Cell, 16(6), 2651–2659. https://doi.org/10.1091/mbc.e04-10-0937
Ibañez-Tallon, I., Pagenstecher, A., Fliegauf, M., Olbrich, H., Kispert, A., Ketelsen, U.-P., North, A., Heintz, N., & Omran, H. (2004). Dysfunction of axonemal dynein heavy chain Mdnah5 inhibits ependymal flow and reveals a novel mechanism for hydrocephalus formation. Human Molecular Genetics, 13(18), 2133–2141. https://doi.org/10.1093/hmg/ddh219
Levine, A. J., Munoz-Sanjuan, I., Bell, E., North, A. J., & Brivanlou, A. H. (2003). Fluorescent labeling of endothelial cells allows in vivo, continuous characterization of the vascular development of Xenopus laevis. Developmental Biology, 254(1), 50–67. https://doi.org/10.1016/S0012-1606(02)00029-5